PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G159200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 302aa    MW: 33290.9 Da    PI: 6.6638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G159200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08155195954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Prupe.6G159200.1.p 155 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 195
                         699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-14151205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.38E-9152200No hitNo description
Gene3DG3DSA:4.10.280.103.0E-12152206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6156195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEINIDYTSK LAMNSSGVDL DDDHASMEDP ILHQISSYEY SSLWPNLPLP HHPLHQIPSS  60
STAPPPPPHH HQSIADHQML LLAGGNNNNI FVELNEHEDD EEAGDGGGGE EELGAMKEMM  120
YKIAAMQPVD IDPATIRRPK RRNVRISDDP QSVAARHRRE RISEKIRILQ RLVPGGTKMD  180
TASMLDEAIR YVKFLKRQIR LLQSSSSSSA LSNNNHQLHD HDPQSAAAHD DHDHGQCNIN  240
IINNINGSSS VGARGARLPL DWPRHNINVN HINTAQKPNN HHAAAAAAAT TTTSSARNPR  300
H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231650.11e-136PREDICTED: transcription factor HEC3-like
TrEMBLM5W2731e-133M5W273_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.18e-45bHLH family protein